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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Bobby Estalella | 25th | Chris Stewart | 17th | 24th |
| First Basemen | Adam LaRoche | 25th | Sergio Garcia | Tied for 20th | 24th |
| Second Basemen | Tony Graffanino | 24th | Jose Amador | 5th | 14th |
| Third Basemen | Pedro Feliz | 13th | Trevor Plouffe | 2nd | 4th |
| Shortstops | Miguel Tejada | 6th | Scott Moore | 6th | 2nd |
| Left Fielders | Lew Ford | 24th | Reggie Willits | 5th | 7th |
| Center Fielders | Jay Payton | 27th | Sergio Palafox | Tied for 7th | 14th |
| Right Fielders | Craig Wilson | 19th | Sean Farrell | 2nd | 8th |
| Starting Pitchers | Steve Trachsel | 27th | 29th | 30th | |
| Relievers | Travis Miller | 13th | Mark Lowe | 11th | 11th |
| Closers | Matt Belisle | 5th | Matt Riley | 30th | 26th |
