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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Chris Snyder | 28th | Brayan Pena | Tied for 11th | 19th |
| First Basemen | Jeff Bagwell | 9th | Paul McAnulty | 20th | 20th |
| Second Basemen | Jeff Kent | Tied for 6th | Daniel Joseph Garcia | 2nd | 5th |
| Third Basemen | Joe Crede | Tied for 7th | Adam Heether | Tied for 13th | Tied for 4th |
| Shortstops | Juan Castro | 30th | Asdrubal Cabrera | Tied for 8th | 14th |
| Left Fielders | Ben Grieve | 11th | Javier Herrera | 18th | 17th |
| Center Fielders | Eric Byrnes | 18th | Jason Pridie | 4th | 10th |
| Right Fielders | Jeremy Giambi | 8th | Albino Contreras | Tied for 10th | Tied for 6th |
| Starting Pitchers | Carlos Zambrano | 6th | Brian Bannister | Tied for 21st | 17th |
| Relievers | Travis Miller | 4th | Phil Akens | 24th | 11th |
| Closers | Francisco Rodriguez | Tied for 6th | Tyler Clippard | 23rd | 23rd |
