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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jayson Werth | 1st | Jose Lobaton | 21st | 16th |
| First Basemen | Cliff Floyd | 25th | Humberto Cota | 19th | 27th |
| Second Basemen | Damian Jackson | 23rd | Alberto Callaspo | 15th | 16th |
| Third Basemen | Hank Blalock | 4th | Angel Abreu | 23rd | 20th |
| Shortstops | Michael Barrett | 13th | Mike Rouse | 8th | 7th |
| Left Fielders | Danny Bautista | 24th | Tied for 22nd | 27th | |
| Center Fielders | Gregor Blanco | 30th | Gregor Blanco | 15th | 25th |
| Right Fielders | Preston Wilson | 22nd | Chris Snelling | 20th | 21st |
| Starting Pitchers | Julian Tavarez | 24th | Wandy Rodriguez | 15th | 23rd |
| Relievers | Rick White | 6th | Yusmeiro Petit | 7th | 2nd |
| Closers | Roberto Hernandez | 26th | Carlos Villanueva | 27th | 29th |
