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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Yadier Molina | 1st | John Baker | 4th | 1st |
| First Basemen | Justin Morneau | 22nd | Micah Hoffpauir | 8th | 10th |
| Second Basemen | Aaron Hill | 5th | Kevin Melillo | 19th | 18th |
| Third Basemen | Robin Ventura | 8th | Jeff Baker | 3rd | 2nd |
| Shortstops | Royce Clayton | 8th | Julio Hernandez | 19th | 16th |
| Left Fielders | Austin Kearns | 10th | Matt Murton | 13th | 12th |
| Center Fielders | Curtis Granderson | 13th | Tony Gwynn Jr. | 4th | 4th |
| Right Fielders | Aaron Rowand | 8th | Jordan Parraz | 21st | 16th |
| Starting Pitchers | Freddy Garcia | 1st | Roberto H. Hernandez | Tied for 17th | 11th |
| Relievers | Dustin McGowan | 29th | Eddie Bonine | 24th | 29th |
| Closers | Felix Rodriguez | 14th | Eddie Bonine | 5th | 7th |
