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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jose Molina | 16th | Russell Martin | Tied for 7th | 10th |
| First Basemen | Bill Mueller | 25th | Joey Votto | 6th | 14th |
| Second Basemen | Jose Hernandez | 29th | Josh Wilson | Tied for 13th | 22nd |
| Third Basemen | David Bell | 21st | 25th | 28th | |
| Shortstops | Chris Gomez | 27th | Heber Gomez | Tied for 7th | 12th |
| Left Fielders | Jody Gerut | 24th | Ruben Mateo | 7th | 13th |
| Center Fielders | Chris Burke | 28th | Buck Coats | 23rd | 28th |
| Right Fielders | Raul Mondesi | 16th | Doug Deeds | 22nd | 20th |
| Starting Pitchers | Brian Meadows | 29th | Chad Billingsley | 27th | 30th |
| Relievers | Dennys Reyes | 7th | Santiago Casilla | 1st | 4th |
| Closers | Byung-hyun Kim | 22nd | Blaine Boyer | 1st | 15th |
