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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Shea Hillenbrand | 25th | J.D. Closser | Tied for 11th | 15th |
| First Basemen | Raul Ibanez | 29th | Brett Harper | 2nd | 16th |
| Second Basemen | Frank Catalanotto | 11th | Craig Stansberry | Tied for 15th | 10th |
| Third Basemen | Brian Roberts | 18th | Greg Dobbs | 8th | 9th |
| Shortstops | Carlos Guillen | 6th | Luis Cruz | Tied for 23rd | 16th |
| Left Fielders | Jason Bay | 5th | Jeff Bailey | 7th | 2nd |
| Center Fielders | Richard Hidalgo | 3rd | Tied for 25th | 17th | |
| Right Fielders | Milton Bradley | 1st | Shane Costa | 8th | 2nd |
| Starting Pitchers | Derek Lowe | 15th | Gio Gonzalez | 26th | 26th |
| Relievers | Zach Duke | 24th | Jose Veras | 27th | 25th |
| Closers | Steve Karsay | 4th | Matt Albers | Tied for 16th | 4th |
