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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Mike Lieberthal | 2nd | Timothy Fisher | Tied for 11th | 2nd |
| First Basemen | Roberto Alomar | 15th | Martin Malpica | 26th | 26th |
| Second Basemen | Junior Spivey | 18th | Elliot Johnson | Tied for 15th | 13th |
| Third Basemen | David Wright | 21st | Tied for 25th | 29th | |
| Shortstops | Willie Greene | 18th | Tied for 27th | 29th | |
| Left Fielders | Dan Johnson | 23rd | Elijah Dukes | Tied for 8th | 9th |
| Center Fielders | Chris Denorfia | 21st | Kenny Kelly | Tied for 11th | 13th |
| Right Fielders | Jeffrey Hammonds | 25th | Melky Cabrera | 18th | 19th |
| Starting Pitchers | John Smiley | 29th | Andy Sonnanstine | 16th | 24th |
| Relievers | Keith Foulke | 7th | Wilton Lopez | 4th | 4th |
| Closers | Mike Williams | 29th | Matt Lindstrom | 26th | 30th |
