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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Mike Lieberthal | 2nd | Timothy Fisher | Tied for 10th | 3rd |
| First Basemen | Edwin Encarnacion | 28th | Ryan Mulhern | Tied for 12th | 21st |
| Second Basemen | Junior Spivey | 19th | Tug Hulett | 26th | 25th |
| Third Basemen | David Wright | 4th | Tied for 27th | 23rd | |
| Shortstops | Willie Greene | 20th | Tied for 25th | 27th | |
| Left Fielders | Jason Michaels | 26th | Tied for 21st | 28th | |
| Center Fielders | Chris Denorfia | 19th | Chip Ambres | 25th | 25th |
| Right Fielders | Jeffrey Hammonds | 26th | Elijah Dukes | 20th | 27th |
| Starting Pitchers | Chris Holt | 29th | Jeff Niemann | 19th | 27th |
| Relievers | Jared Burton | 18th | Matt Lindstrom | 7th | 16th |
| Closers | Pat Neshek | 17th | Sergio Santos | 10th | 14th |
